A method for identifying sets of genes with spatially varying correlation structure.
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A probabilistic model that adjusts for spot swapping to provide more accurate estimates of gene-specific UMI counts.
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Dino is a normalization method based on a flexible negative-binomial mixture model of gene expression. Dino is robust to shallow sequencing, sample heterogeneity and varying zero proportions, leading to improved performance in downstream analyses in a number of settings. GitHub
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SCnorm is an accurate and efficient normalization of single-cell RNA-seq data.
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Oscope identifies and characterizes the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population.
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An empirical Bayes hierarchical model for inference in RNA-seq experiments.
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