SptialView

An open-source web browser-based interactive application for visualizing data and results from experiment having multiple 10x Genomics Visium samples.

SpatialView

SpatialView is an open-source web browser-based interactive application for visualizing data and results from multiple 10x Genomics Visium experiments. Github

Demo application

User Guide

Although it's a stand alone project, data can be exported from R and Python using the complementary packages SpatialViewR and SpatialViewPy respectively.

Tutorials

Currently SpatialViewR supports data export from Seurat and SpatialExperiment objects. SpatiViewPy package supports data export from Scanpy.

Tutorial : from Seurat object

A step-by-step tutorial for exporting data from Seurat using SpatialViewR package.

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Tutorial : from SpatialExperiment

A step-by-step tutorial for exporting data from SpatialExperiment using SpatialViewR package.

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Tutorial : from Scanpy

A step-by-step tutorial for exporting data from Scanpy using SpatialViewPy package.

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